Count multi-level motifs

count_motifs(
  net,
  motifs,
  lvl_attr = c("sesType"),
  assume_sparse = TRUE,
  omit_total_result = TRUE,
  directed = NULL
)

Arguments

net	A network object with a node attribute specifying the level of each node
motifs	a list of motif identifiers which shall be counted, e.g. `list("1,2[I.C]")`
lvl_attr	character vector specifying the vertex attribute name where level information is stored in `net`
assume_sparse	whether the network shall be assumed to be sparse (for optimization), default TRUE
omit_total_result	whether total results shall be omitted, default FALSE
directed	whether the graph shall be treated as a directed graph. Per default (`NULL`), this is determined automatically using the structure of the provided network object

Value

data frame with a column containing motif identifier strings and one column containing motif counts

Examples

# \dontrun{
count_motifs(ml_net,
  lvl_attr = c("sesType"),
  motifs = list("1,2[I.C]", "1,2[II.C]", "2,1[I.C]", "2,1[II.C]"),
  directed = FALSE
)
#>               motif count
#> 1,2[I.C]   1,2[I.C]   543
#> 1,2[II.C] 1,2[II.C]   167
#> 2,1[I.C]   2,1[I.C]   217
#> 2,1[II.C] 2,1[II.C]     7
# }